Index

_

__init__() (skimage.feature.BRIEF method) (skimage.feature.CENSURE method) (skimage.feature.ORB method) (skimage.filter.LPIFilter2D method) (skimage.filter.deprecated method) (skimage.graph.MCP method) (skimage.graph.MCP_Connect method) (skimage.graph.MCP_Flexible method) (skimage.graph.MCP_Geometric method) (skimage.io.Image method) (skimage.io.ImageCollection method) (skimage.io.MultiImage method) (skimage.measure.CircleModel method) (skimage.measure.EllipseModel method) (skimage.measure.LineModel method) (skimage.novice.Picture method) (skimage.transform.AffineTransform method) (skimage.transform.PiecewiseAffineTransform method) (skimage.transform.PolynomialTransform method) (skimage.transform.ProjectiveTransform method) (skimage.transform.SimilarityTransform method) (skimage.viewer.CollectionViewer method) (skimage.viewer.canvastools.LineTool method) (skimage.viewer.canvastools.PaintTool method) (skimage.viewer.canvastools.RectangleTool method) (skimage.viewer.canvastools.ThickLineTool method) (skimage.viewer.plugins.CannyPlugin method) (skimage.viewer.plugins.ColorHistogram method) (skimage.viewer.plugins.Crop method) (skimage.viewer.plugins.LabelPainter method) (skimage.viewer.plugins.LineProfile method) (skimage.viewer.plugins.Measure method) (skimage.viewer.plugins.OverlayPlugin method) (skimage.viewer.plugins.PlotPlugin method) (skimage.viewer.utils.ClearColormap method) (skimage.viewer.utils.FigureCanvas method) (skimage.viewer.utils.LinearColormap method) (skimage.viewer.utils.RequiredAttr method) (skimage.viewer.viewers.CollectionViewer method) (skimage.viewer.widgets.BaseWidget method) (skimage.viewer.widgets.ComboBox method) (skimage.viewer.widgets.OKCancelButtons method) (skimage.viewer.widgets.SaveButtons method) (skimage.viewer.widgets.Slider method) (skimage.viewer.widgets.Text method)

A

ab_selected() (skimage.viewer.plugins.ColorHistogram method) add_plot() (skimage.viewer.plugins.PlotPlugin method) adjust_gamma() (in module skimage.exposure) adjust_log() (in module skimage.exposure) adjust_sigmoid() (in module skimage.exposure) AffineTransform (class in skimage.transform)

alpha (skimage.novice.Picture attribute) approximate_polygon() (in module skimage.measure) array (skimage.novice.Picture attribute) attach() (skimage.viewer.plugins.CannyPlugin method) (skimage.viewer.plugins.ColorHistogram method) (skimage.viewer.plugins.Crop method) (skimage.viewer.plugins.LabelPainter method) (skimage.viewer.plugins.LineProfile method) (skimage.viewer.plugins.Measure method) (skimage.viewer.plugins.OverlayPlugin method) (skimage.viewer.plugins.PlotPlugin method) autolevel() (in module skimage.filter.rank) autolevel_percentile() (in module skimage.filter.rank)

B

ball() (in module skimage.morphology) BaseWidget (class in skimage.viewer.widgets) bezier_curve() (in module skimage.draw) binary_closing() (in module skimage.morphology) binary_dilation() (in module skimage.morphology) binary_erosion() (in module skimage.morphology) binary_opening() (in module skimage.morphology) black_tophat() (in module skimage.morphology)

blob_dog() (in module skimage.feature) blob_doh() (in module skimage.feature) blob_log() (in module skimage.feature) block_reduce() (in module skimage.measure) blue (skimage.novice.Picture attribute) bottomhat() (in module skimage.filter.rank) BRIEF (class in skimage.feature)

C

call_plugin() (in module skimage.io) camera() (in module skimage.data) canny() (in module skimage.filter) CannyPlugin (class in skimage.viewer.plugins) CENSURE (class in skimage.feature) checkerboard() (in module skimage.data) chelsea() (in module skimage.data) circle() (in module skimage.draw) circle_perimeter() (in module skimage.draw) circle_perimeter_aa() (in module skimage.draw) CircleModel (class in skimage.measure) clear_border() (in module skimage.segmentation) ClearColormap (class in skimage.viewer.utils) clock() (in module skimage.data) close_plugin() (skimage.viewer.widgets.OKCancelButtons method) closeEvent() (skimage.viewer.plugins.OverlayPlugin method) closing() (in module skimage.morphology) coffee() (in module skimage.data) coins() (in module skimage.data) CollectionViewer (class in skimage.viewer) (class in skimage.viewer.viewers) color (skimage.viewer.plugins.OverlayPlugin attribute) ColorHistogram (class in skimage.viewer.plugins) colors (skimage.viewer.plugins.OverlayPlugin attribute) combine_stains() (in module skimage.color)

ComboBox (class in skimage.viewer.widgets) concatenate() (skimage.io.ImageCollection method) (skimage.io.MultiImage method) concatenate_images() (in module skimage.io) conserve_memory (skimage.io.ImageCollection attribute) (skimage.io.MultiImage attribute) convert_colorspace() (in module skimage.color) convex_hull_image() (in module skimage.morphology) convex_hull_object() (in module skimage.morphology) corner_fast() (in module skimage.feature) corner_foerstner() (in module skimage.feature) corner_harris() (in module skimage.feature) corner_kitchen_rosenfeld() (in module skimage.feature) corner_moravec() (in module skimage.feature) corner_orientations() (in module skimage.feature) corner_peaks() (in module skimage.feature) corner_shi_tomasi() (in module skimage.feature) corner_subpix() (in module skimage.feature) corners (skimage.viewer.canvastools.RectangleTool attribute) correct_mesh_orientation() (in module skimage.measure) create_connection() (skimage.graph.MCP_Connect method) Crop (class in skimage.viewer.plugins) crop() (skimage.viewer.plugins.Crop method) cube() (in module skimage.morphology) cumulative_distribution() (in module skimage.exposure)

D

daisy() (in module skimage.feature) deltaE_cie76() (in module skimage.color) deltaE_ciede2000() (in module skimage.color) deltaE_ciede94() (in module skimage.color) deltaE_cmc() (in module skimage.color) denoise_bilateral() (in module skimage.filter) (in module skimage.restoration) denoise_tv_bregman() (in module skimage.filter) (in module skimage.restoration) denoise_tv_chambolle() (in module skimage.filter) (in module skimage.restoration) deprecated (class in skimage.filter)

detect() (skimage.feature.CENSURE method) (skimage.feature.ORB method) detect_and_extract() (skimage.feature.ORB method) diamond() (in module skimage.morphology) dilation() (in module skimage.morphology) disk() (in module skimage.morphology) display_filtered_image() (skimage.viewer.plugins.OverlayPlugin method) downscale_local_mean() (in module skimage.transform) dtype_limits() (in module skimage) (in module skimage.util)

E

edge_centers (skimage.viewer.canvastools.RectangleTool attribute) ellipse() (in module skimage.draw) ellipse_perimeter() (in module skimage.draw) EllipseModel (class in skimage.measure) ellipsoid() (in module skimage.draw) ellipsoid_stats() (in module skimage.draw) end_points (skimage.viewer.canvastools.LineTool attribute) enhance_contrast() (in module skimage.filter.rank) enhance_contrast_percentile() (in module skimage.filter.rank) entropy() (in module skimage.filter.rank)

equalize() (in module skimage.filter.rank) equalize_adapthist() (in module skimage.exposure) equalize_hist() (in module skimage.exposure) erosion() (in module skimage.morphology) estimate() (skimage.measure.CircleModel method) (skimage.measure.EllipseModel method) (skimage.measure.LineModel method) (skimage.transform.PiecewiseAffineTransform method) (skimage.transform.PolynomialTransform method) (skimage.transform.ProjectiveTransform method) (skimage.transform.SimilarityTransform method) estimate_transform() (in module skimage.transform) examine_neighbor() (skimage.graph.MCP_Flexible method) extents (skimage.viewer.canvastools.RectangleTool attribute) extract() (skimage.feature.BRIEF method) (skimage.feature.ORB method)

F

felzenszwalb() (in module skimage.segmentation) figimage() (in module skimage.viewer.utils) FigureCanvas (class in skimage.viewer.utils) filename (skimage.io.MultiImage attribute) files (skimage.io.ImageCollection attribute) filtered_image (skimage.viewer.plugins.OverlayPlugin attribute) find_available_plugins() (in module skimage.io)

find_boundaries() (in module skimage.segmentation) find_contours() (in module skimage.measure) find_costs() (skimage.graph.MCP method) format (skimage.novice.Picture attribute) from_size() (skimage.novice.Picture static method) frt2() (in module skimage.transform)

G

gabor_filter() (in module skimage.filter) gabor_kernel() (in module skimage.filter) gaussian_filter() (in module skimage.filter) geometry (skimage.viewer.canvastools.LineTool attribute) (skimage.viewer.canvastools.PaintTool attribute) (skimage.viewer.canvastools.RectangleTool attribute) get_profiles() (skimage.viewer.plugins.LineProfile method) goal_reached() (skimage.graph.MCP method) gradient() (in module skimage.filter.rank)

gradient_percentile() (in module skimage.filter.rank) gray2rgb() (in module skimage.color) green (skimage.novice.Picture attribute) greycomatrix() (in module skimage.feature) greycoprops() (in module skimage.feature) guess_spatial_dimensions() (in module skimage.color)

H

hed2rgb() (in module skimage.color) height (skimage.novice.Picture attribute) help() (skimage.viewer.plugins.ColorHistogram method) (skimage.viewer.plugins.Crop method) (skimage.viewer.plugins.LabelPainter method) (skimage.viewer.plugins.LineProfile method) (skimage.viewer.plugins.Measure method) hessian_matrix() (in module skimage.feature) hessian_matrix_det() (in module skimage.feature) hessian_matrix_eigvals() (in module skimage.feature) histogram() (in module skimage.exposure) hog() (in module skimage.feature) horse() (in module skimage.data)

hough_circle() (in module skimage.transform) hough_ellipse() (in module skimage.transform) hough_line() (in module skimage.transform) hough_line_peaks() (in module skimage.transform) hprewitt() (in module skimage.filter) hscharr() (in module skimage.filter) hsobel() (in module skimage.filter) hsv2rgb() (in module skimage.color)

I

ifrt2() (in module skimage.transform) Image (class in skimage.io) ImageCollection (class in skimage.io) ImageViewer (class in skimage.viewer) (class in skimage.viewer.viewers) img_as_bool() (in module skimage) (in module skimage.util) img_as_float() (in module skimage) (in module skimage.util) img_as_int() (in module skimage) (in module skimage.util) img_as_ubyte() (in module skimage) (in module skimage.util) img_as_uint() (in module skimage) (in module skimage.util) immunohistochemistry() (in module skimage.data) imread() (in module skimage.data) (in module skimage.io) imread_collection() (in module skimage.io)

imread_collection_wrapper() (in module skimage.io) imsave() (in module skimage.io) imshow() (in module skimage.io) index (skimage.viewer.widgets.ComboBox attribute) init_qtapp() (in module skimage.viewer.utils) instances (skimage.viewer.utils.RequiredAttr attribute) integral_image() (in module skimage.transform) integrate() (in module skimage.transform) inverse() (in module skimage.filter) (skimage.transform.PiecewiseAffineTransform method) (skimage.transform.PolynomialTransform method) (skimage.transform.ProjectiveTransform method) iradon() (in module skimage.transform) iradon_sart() (in module skimage.transform)

J

join_segmentations() (in module skimage.segmentation)

K

keyPressEvent() (skimage.viewer.CollectionViewer method) (skimage.viewer.viewers.CollectionViewer method)

L

lab2lch() (in module skimage.color) lab2rgb() (in module skimage.color) lab2xyz() (in module skimage.color) label (skimage.viewer.canvastools.PaintTool attribute) (skimage.viewer.plugins.LabelPainter attribute) label() (in module skimage.morphology) label2rgb() (in module skimage.color) LabelPainter (class in skimage.viewer.plugins) lch2lab() (in module skimage.color) lena() (in module skimage.data) line() (in module skimage.draw) line_aa() (in module skimage.draw) line_changed() (skimage.viewer.plugins.LineProfile method) (skimage.viewer.plugins.Measure method)

LinearColormap (class in skimage.viewer.utils) LineModel (class in skimage.measure) LineProfile (class in skimage.viewer.plugins) LineTool (class in skimage.viewer.canvastools) load() (in module skimage.data) load_sift() (in module skimage.io) load_surf() (in module skimage.io) local_binary_pattern() (in module skimage.feature) LPIFilter2D (class in skimage.filter) luv2rgb() (in module skimage.color) luv2xyz() (in module skimage.color)

M

marching_cubes() (in module skimage.measure) mark_boundaries() (in module skimage.segmentation) match_descriptors() (in module skimage.feature) match_template() (in module skimage.feature) matrix_transform() (in module skimage.transform) maximum() (in module skimage.filter.rank) MCP (class in skimage.graph) MCP_Connect (class in skimage.graph) MCP_Flexible (class in skimage.graph) MCP_Geometric (class in skimage.graph) mean() (in module skimage.filter.rank) mean_bilateral() (in module skimage.filter.rank) mean_percentile() (in module skimage.filter.rank)

Measure (class in skimage.viewer.plugins) medial_axis() (in module skimage.morphology) median() (in module skimage.filter.rank) mesh_surface_area() (in module skimage.measure) minimum() (in module skimage.filter.rank) modal() (in module skimage.filter.rank) modified (skimage.novice.Picture attribute) moments() (in module skimage.measure) moments_central() (in module skimage.measure) moments_hu() (in module skimage.measure) moments_normalized() (in module skimage.measure) moon() (in module skimage.data) MultiImage (class in skimage.io)

N

name (skimage.viewer.plugins.CannyPlugin attribute) (skimage.viewer.plugins.ColorHistogram attribute) (skimage.viewer.plugins.Crop attribute) (skimage.viewer.plugins.LabelPainter attribute) (skimage.viewer.plugins.LineProfile attribute) (skimage.viewer.plugins.Measure attribute) new_plot() (in module skimage.viewer.utils)

noise_filter() (in module skimage.filter.rank)

O

octagon() (in module skimage.morphology) octahedron() (in module skimage.morphology) OKCancelButtons (class in skimage.viewer.widgets) on_enter() (skimage.viewer.plugins.LabelPainter method) on_key_press() (skimage.viewer.canvastools.ThickLineTool method) on_mouse_press() (skimage.viewer.canvastools.LineTool method) (skimage.viewer.canvastools.PaintTool method) on_mouse_release() (skimage.viewer.canvastools.LineTool method) (skimage.viewer.canvastools.PaintTool method) on_move() (skimage.viewer.canvastools.LineTool method) (skimage.viewer.canvastools.PaintTool method) on_scroll() (skimage.viewer.canvastools.ThickLineTool method)

onmove() (skimage.viewer.canvastools.RectangleTool method) open() (in module skimage.novice) opening() (in module skimage.morphology) ORB (class in skimage.feature) otsu() (in module skimage.filter.rank) output() (skimage.viewer.plugins.ColorHistogram method) (skimage.viewer.plugins.LineProfile method) (skimage.viewer.plugins.OverlayPlugin method) overlay (skimage.viewer.canvastools.PaintTool attribute) (skimage.viewer.plugins.OverlayPlugin attribute) OverlayPlugin (class in skimage.viewer.plugins)

P

pad() (in module skimage.util) page() (in module skimage.data) PaintTool (class in skimage.viewer.canvastools) path (skimage.novice.Picture attribute) peak_local_max() (in module skimage.feature) percentile() (in module skimage.filter.rank) perimeter() (in module skimage.measure) Picture (class in skimage.novice) PiecewiseAffineTransform (class in skimage.transform) plot_matches() (in module skimage.feature) PlotPlugin (class in skimage.viewer.plugins) Plugin (class in skimage.viewer.plugins) plugin_info() (in module skimage.io) plugin_order() (in module skimage.io) polygon() (in module skimage.draw) PolynomialTransform (class in skimage.transform)

pop() (in module skimage.filter.rank) (in module skimage.io) pop_bilateral() (in module skimage.filter.rank) pop_percentile() (in module skimage.filter.rank) predict_x() (skimage.measure.LineModel method) predict_xy() (skimage.measure.CircleModel method) (skimage.measure.EllipseModel method) predict_y() (skimage.measure.LineModel method) press() (skimage.viewer.canvastools.RectangleTool method) prewitt() (in module skimage.filter) probabilistic_hough_line() (in module skimage.transform) profile_line() (in module skimage.measure) ProjectiveTransform (class in skimage.transform) push() (in module skimage.io) pyramid_expand() (in module skimage.transform) pyramid_gaussian() (in module skimage.transform) pyramid_laplacian() (in module skimage.transform) pyramid_reduce() (in module skimage.transform)

Q

quickshift() (in module skimage.segmentation)

R

radius (skimage.viewer.canvastools.PaintTool attribute) (skimage.viewer.plugins.LabelPainter attribute) radon() (in module skimage.transform) random_noise() (in module skimage.util) random_walker() (in module skimage.segmentation) rank_order() (in module skimage.filter) ransac() (in module skimage.measure) reconstruction() (in module skimage.morphology) rectangle() (in module skimage.morphology) RectangleTool (class in skimage.viewer.canvastools) red (skimage.novice.Picture attribute) redraw() (skimage.viewer.plugins.PlotPlugin method) regionprops() (in module skimage.measure) regular_grid() (in module skimage.util) relabel_from_one() (in module skimage.segmentation) relabel_sequential() (in module skimage.segmentation) release() (skimage.viewer.canvastools.RectangleTool method) reload() (skimage.io.ImageCollection method) remove_small_objects() (in module skimage.morphology) RequiredAttr (class in skimage.viewer.utils) rescale() (in module skimage.transform) rescale_intensity() (in module skimage.exposure) reset_axes() (skimage.viewer.plugins.LineProfile method)

reset_plugins() (in module skimage.io) residuals() (skimage.measure.CircleModel method) (skimage.measure.EllipseModel method) (skimage.measure.LineModel method) resize() (in module skimage.transform) resizeEvent() (skimage.viewer.utils.FigureCanvas method) rgb (skimage.novice.Picture attribute) rgb2gray() (in module skimage.color) rgb2grey() (in module skimage.color) rgb2hed() (in module skimage.color) rgb2hsv() (in module skimage.color) rgb2lab() (in module skimage.color) rgb2luv() (in module skimage.color) rgb2rgbcie() (in module skimage.color) rgb2xyz() (in module skimage.color) rgba (skimage.novice.Picture attribute) rgbcie2rgb() (in module skimage.color) richardson_lucy() (in module skimage.restoration) roberts() (in module skimage.filter) roberts_negative_diagonal() (in module skimage.filter) roberts_positive_diagonal() (in module skimage.filter) rotate() (in module skimage.transform) rotation (skimage.transform.AffineTransform attribute) (skimage.transform.SimilarityTransform attribute) route_through_array() (in module skimage.graph)

S

save() (skimage.novice.Picture method) save_to_file() (skimage.viewer.widgets.SaveButtons method) save_to_stack() (skimage.viewer.widgets.SaveButtons method) SaveButtons (class in skimage.viewer.widgets) scale (skimage.transform.AffineTransform attribute) (skimage.transform.SimilarityTransform attribute) scharr() (in module skimage.filter) separate_stains() (in module skimage.color) set_color() (in module skimage.draw) shape (skimage.viewer.canvastools.PaintTool attribute) shear (skimage.transform.AffineTransform attribute) shortest_path() (in module skimage.graph) show() (in module skimage.io) (skimage.novice.Picture method) SimilarityTransform (class in skimage.transform) size (skimage.novice.Picture attribute) skeletonize() (in module skimage.morphology) skimage (module) skimage.color (module) skimage.data (module) skimage.draw (module) skimage.exposure (module) skimage.feature (module) skimage.filter (module) skimage.filter.rank (module) skimage.graph (module) skimage.io (module) skimage.measure (module) skimage.morphology (module)

skimage.novice (module) skimage.restoration (module) skimage.segmentation (module) skimage.transform (module) skimage.util (module) skimage.viewer (module) skimage.viewer.canvastools (module) skimage.viewer.plugins (module) skimage.viewer.utils (module) skimage.viewer.viewers (module) skimage.viewer.widgets (module) slic() (in module skimage.segmentation) Slider (class in skimage.viewer.widgets) sobel() (in module skimage.filter) square() (in module skimage.morphology) star() (in module skimage.morphology) start_qtapp() (in module skimage.viewer.utils) structural_similarity() (in module skimage.measure) structure_tensor() (in module skimage.feature) structure_tensor_eigvals() (in module skimage.feature) subdivide_polygon() (in module skimage.measure) subtract_mean() (in module skimage.filter.rank) subtract_mean_percentile() (in module skimage.filter.rank) sum() (in module skimage.filter.rank) sum_bilateral() (in module skimage.filter.rank) sum_percentile() (in module skimage.filter.rank) swirl() (in module skimage.transform)

T

test() (in module skimage) Text (class in skimage.viewer.widgets) text (skimage.viewer.widgets.Text attribute) text() (in module skimage.data) ThickLineTool (class in skimage.viewer.canvastools) threshold() (in module skimage.filter.rank) threshold_adaptive() (in module skimage.filter) threshold_isodata() (in module skimage.filter)

threshold_otsu() (in module skimage.filter) threshold_percentile() (in module skimage.filter.rank) threshold_yen() (in module skimage.filter) tophat() (in module skimage.filter.rank) traceback() (skimage.graph.MCP method) translation (skimage.transform.AffineTransform attribute) (skimage.transform.SimilarityTransform attribute) travel_cost() (skimage.graph.MCP_Flexible method)

U

unique_rows() (in module skimage.util) unsupervised_wiener() (in module skimage.restoration) unwrap_phase() (in module skimage.restoration) update() (skimage.viewer.canvastools.LineTool method) update_axes_image() (in module skimage.viewer.utils) update_cursor() (skimage.viewer.canvastools.PaintTool method)

update_image() (skimage.viewer.CollectionViewer method) (skimage.viewer.viewers.CollectionViewer method) update_index() (skimage.viewer.CollectionViewer method) (skimage.viewer.viewers.CollectionViewer method) update_node() (skimage.graph.MCP_Flexible method) update_original_image() (skimage.viewer.widgets.OKCancelButtons method) update_overlay() (skimage.viewer.canvastools.PaintTool method) use_plugin() (in module skimage.io)

V

val (skimage.viewer.widgets.BaseWidget attribute) (skimage.viewer.widgets.ComboBox attribute) (skimage.viewer.widgets.Slider attribute) view_as_blocks() (in module skimage.util) view_as_windows() (in module skimage.util)

vprewitt() (in module skimage.filter) vscharr() (in module skimage.filter) vsobel() (in module skimage.filter)

W

warp() (in module skimage.transform) warp_coords() (in module skimage.transform) watershed() (in module skimage.morphology)

white_tophat() (in module skimage.morphology) width (skimage.novice.Picture attribute) wiener() (in module skimage.filter) (in module skimage.restoration)

X

xy_array (skimage.novice.Picture attribute) xyz2lab() (in module skimage.color)

xyz2luv() (in module skimage.color) xyz2rgb() (in module skimage.color)

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